PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_8BE5BE6AC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1129aa    MW: 125319 Da    PI: 6.3236
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_8BE5BE6AC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.6e-22132233199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F
  Traes_6DS_8BE5BE6AC.1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIF 218
                            99******************************9999986.************************************************ PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++++++l+++++r+
  Traes_6DS_8BE5BE6AC.1 219 V--RDEKQQLLLGIRRA 233
                            *..5688889****997 PP

2Auxin_resp114.97.4e-38258341183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ ete+  +rr++Gt++g+sdldpvrW+nS+WrsL+
  Traes_6DS_8BE5BE6AC.1 258 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 341
                            799********************************989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-41121261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-39124247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-18131223No hitNo description
PROSITE profilePS5086311.448132234IPR003340B3 DNA binding domain
PfamPF023623.5E-20132233IPR003340B3 DNA binding domain
SMARTSM010191.1E-21132234IPR003340B3 DNA binding domain
PfamPF065077.0E-33258341IPR010525Auxin response factor
PfamPF023094.3E-89931081IPR033389AUX/IAA domain
PROSITE profilePS5174526.9479961080IPR000270PB1 domain
SuperFamilySSF542772.84E-610101075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1129 aa     Download sequence    Send to blast
MAQSPASSAV AAPAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA  60
SMQKDVEAHV PSYPNLPSKL ICLLHSVTLQ ADPDTDEVYA QMTLQPVNTY AKEALQLSEL  120
ALRQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPS LDFSLQPPCQ ELQARDIHDN  180
VWTFRHIFRG QPKRHLLTTG WSLFVSGKKL FAGDSVIFVR DEKQQLLLGI RRANRQPTNI  240
SSSVLSSDSM HIGVLAAAAH ASANTSPFTI FYNPRASPTE FVIPFAKYQK AMYSNQISLG  300
MRFRMMCETE ELGTRRYMGT ITGISDLDPV RWKNSQWRSL QVGWDESAAG ERRNRVSIWE  360
IEPLAAPFFI CPQPFFGVKR PRQLDDESLE MESLMKRAMP WLGEEICIKD PQTQSATMPG  420
LSLVQWMNMN RQQSSSLAST AMQSEYLRSA SNPAMQNIGA ADLARQLYMQ NHLLQQNSMQ  480
FNPPKLHQQM KPINDLSNAA LPLNQLGAIR NHQDQKQDQQ RQQQSGIQAI PLSQAQAQTN  540
IVQAQVILQN QMQQQQQQKQ PPPSPTQNQH GASGQHLLQS HQLQDQNLQM QQQQLLLHQQ  600
LQQQQQLNKL PGQLANLASQ QTQLSDQELH LQLLQKLQQQ SLMSQSAVTL SRLPIIQEQQ  660
NFLVDMQQQL SNSHSLAQQQ VMPQQDCRTS SSQTTQLPPP IQQEQQQQKP SQKQVAPTYV  720
SEAAFAQISS TSVIPKTGNS MIVPGAAQSA VTEEIPSCST SPSTANGNHL VQPTIGRNDH  780
CKISTEKVPH SIAQMSILTP IEAVSVTPVT TKELPKLNNG VKSSAITSKL PNVVSGLQNF  840
MNNALPTDNL ETASSATSLW PSQTDGLLHQ GFATSNFNQH QMFKDELPDV EIQGVDPSNS  900
ALFGMNNDGP LGFPMETEGL LENALDSVKY QNHFSTDDEN NYQMQKDARQ EISTSMVSQS  960
FGQSDMAFNS IDSAINDGAL MNRSSWPPAA PPQRMRTFTK VYKRGAVGRS IDIGRFSGYG  1020
ELNQALARMF GIEGQLEDRQ RIGWKLVYTD HEDDVLLLGD DPWEEFVNCV KCIRILSPQE  1080
VQKMSLDGDL GSNVLPNQAC SSSDGGNTWK PRYEQNSGNP SIGPYDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631836245388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570905.10.0PREDICTED: auxin response factor 5-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLW5H3M20.0W5H3M2_WHEAT; Auxin response factor
STRINGMLOC_73144.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]